Okay, finished the second CBS episode. Their hypothesis is that the foreign material found within the genital tract occurred by transfer. IE, it was somewhere else on her body and when she was picked up and moved - it also moved. The same DNA on two different items of clothing was also explained by transfer. IE, the DNA was on the pajamas or underwear and then the underwear and pajamas touched somehow and there was a transfer. Both of those seem rather thin on probability to me, but I guess there is a possibility of it.
Further evidence of molestation (bruising in the vaginal area and evidence that her genital area had been wiped down) was ignored.
The intruder theory was debunked on the basis of the one window and spiderweb only. They never explored any possibility of an entrance or exit being made from another point in the house that I can recall. They also never brought up the investigation as to how many keys were "out in the wild." I know that somewhere in the police investigation is evidence of that. I remember reading it.
I just rewatched the two Burke interviews to see if my initial impression had changed. The first with the Social Services lady he reminded nearly exactly of my nephew who has had some therapy for neurological issues and hyperactivity. Right down to the tone of voice reminded of my nephew. And believe me, my nephew couldn't reliably keep a secret if you promised him the moon the stars and a new Nintendo every year for the rest of his life. The second interview I did pick up more on him squirming over the pineapple, but I really didn't think it was any sort of smoking gun.
All in all I thought their conclusion boiled down to "Probably Burke. No real proof but we can take some of these facts and shove them in there tight enough that they kind of fit."
I can't say Burke didn't commit the crime, but they didn't fully convince me with what they showed.