Ok...so I have no idea as far as transportation goes...the disney website keeps crashing on me so I hope some of you experienced travelers can help me!

How long does it take to get to the parks??? What time do the monorail/busses/boats start??? Are they effected by EMH?? The monorail goes to Epcot, right? But nowhere else?? Where does the boat go? Do you have to take busses to AK?? What about downtown disney and boardwalk??? And how long do these trips take?? Aaahhhh!!! As you can see I have no idea about how to get around...help, please!!!!!!!!!!!!!!!
You can walk to Magic Kingdom in about 8 minutes. You can also take the monorail, but you will also sit through stops at the Transportation & Ticket Center (TTC), Polynesian and Grand Floridian before coming around to Magic Kingdom. You could wait up to 10 minutes for a monorail to come to Contemporary, and then easily another 20 minutes or more for it to get to Magic Kingdom from there. If you take the monorail FROM Magic Kingdom to Contemporary, Contemporary is the very first stop.
The resort monorail starts running around 7:00 a.m. I'm not sure how late it runs ... at least an hour or 2 after Magic Kingdom closes, but don't quote me on that one.
When at Contemporary, you can get to Epcot by monorail, but it is not a direct trip. You will need to exit your train at the first stop, the TTC, and then walk around to another platform and wait for another monorail that will go to Epcot.
From Contemporary, there is a bus that goes to Animal Kingdom, a bus that goes to Disney's Hollywood Studios, and a bus that goes to Downtown Disney. Contemporary shares buses with one or more other resorts in the area (depending on the destination), so on your way to one of those destinations you may stop at another hotel first, and the same on the way home. I'm not certain about which resorts it shares with for which destinations. The on-the-road driving time from Contemporary to AK or DHS might be 15 minutes, but then you have to factor in the wait time for the bus to come, plus whether or not you will be stopping at any other resorts for pick-ups first.
You CAN'T get directly from Contemporary to the BoardWalk area. You'd have to get to a theme park or Downtown Disney and then get from there to BoardWalk. For example, if MK is still open, you could walk to MK and then take a bus from there to the BoardWalk area resorts. Yes, you could take the monorail to Epcot, but then you'd have to use your ticket to enter Epcot and then walk through Future World and part of World Showcase to get to Epcot's back entrance, which is called International Gateway. You can walk from the International Gateway to the BoardWalk area. If you are at BoardWalk until late (such as after Epcot closes, and more importantly, after Magic Kingdom closes) and you want to use Disney Transport to get back to Contemporary, your only alternative would be to take a bus from there to Downtown Disney and then a bus from there to Contemporary. A taxi would be A LOT faster than that. Any time you need to take two different buses, or one bus + a monorail, you should allow one hour (this includes average waiting time for each bus/train).
Boats from Contemporary go to Wilderness Lodge and to Fort Wilderness Campground. There is no boat service from Contemporary to any theme park or to Downtown Disney.