You are supposed to have an active AP upon check in. Sometimes they ask sometimes they don't. It would easier to have it already active so checking will go a lot smoother.
I too am a new Premium Annual Pass holder. When I spoke to my CM last week he mentioned that I would need to go to the park and get the voucher activated then check in at the resort.....
You can get it done at Downtown Disney, the office is by Once Upon a Toy on the parking lot side. The airport only sells activated passes, you can not redeem a voucher there.
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