Have stayed at both. I like WL, but LOVED AKL. I think the theming is more unique and the service we received was better. Transportation did not make a difference to us; AKL has direct bus routes while WL shared everything. Only the boat to MK was a plus, but we don't spend everyday at MK. I enjoyed the restaurants at AKL more than WL.
We had fantastic views at both. Savannah at AKL with tons of animals right outside our window and very private. Woods view at WL overlooking the otter pond with a nice view of the monorail, castle and fireworks. Could also see the electrical pageant.
PS--I hate split stays. It's not so much the checking out and checking in, but the unpacking, repacking, unpacking and repacking. We did that last month for a 10 day trip and NEVER AGAIN!! Too troublesome and too time consuming.