I'm a little late, but here are my thoughts:
Walt Disney Railroad - a good time to rest
Peter Pan's Flight - always a long line, not worth waiting for, if line is short, jump on
Dumbo - is a must do for us
Carousel of Progress - is a MUST do for us, it's one of my kids favorite ride, no matter how corney it is!!

Wishes - please try your best to see this
Indiana Jones, Lights, Motor, Action and Fantasmic are worth seeing.
We haven't done most the things on your list for AK, besides Kali River Rapids and Triceratop spin. Kali is fun, but you will get wet and Triceratop Spin is something Madi always does.
Honey I shrunk the audience is one of our least favorites, we only did it once and probably won't ever do it again.
Maelstrom is fun
Illuminations is a must see.