I'll get ya some in a bit; in line for the staff event now and my computer goes haywire when I try and run both games at once.
It sounds like you're starting the game directly from a shortcut to the organ scene, if I've read correctly. Maybe try closing the game out and going from the beginning of the game to the end, playing normally, and see if that works?

I've always played it start to finish, only using the map as a shortcut, whenever I get codes.