I bought my AP's last year after the buyout at the Disney store and got the DVC discount applied when I went in May to WDW. It didn't have them with the other tickets, I had to ask the cashier, and they don't give the DVC discount, but they had them. Of course, it is also necessary to recognize that I bought it shortly after the acquisition so some of the policies may have been in flux. I think the easiest thing to do is just ask a clerk. If they don't have them, then you know. Even if they do have them, you will not get the DVC discount but that is easily redeemed at the parks.
Alicat, I see you're in NJ, THE DISNEY STORE on 5th and 55th in NYC may sell them. I know you can buy 5 day passes in there as I've seen them on display. I'm not 100% sure if they sell annual passes, but it might be worth a phone call to check it out.