We have stayed at all but the GF.... just can't seem to talk DH into that one for some reason!
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CR--- very large rooms, some with balcony, some without.. depends on what area of the resort you are staying in. If you are staying in the tower, try and get a room overlooking MK--- I mean, you only have a honeymoon once, right? The other choice I would make would be the south wing overlooking Bay Lake. We loved it! Every morning the ducks and pelicans would do a show for us... no kidding! Also, we could lie in bed and see the Electrical Water Pageant. Ask for a 3rd floor room, as this gives you the best view. The bathrooms are nice and big. There are 2 hot tubs here, as well
. The walk to the MK is a nice factor!
The Poly--- hands down, my favorite! We just stayed there in Oct. We had a garden room, but it was on the 3rd floor of Rarotonga, beside the Great Ceremonial house, and our room looked out over the quiet pool. A very nice retreat at night.... literally, no one was there at night. We found lying in the hammock or sitting in the swings at night and gazing at the MK and GF very romantic. We stopped by the Tambu Lounge and got a drink to go. The pool here is a very nice zero entry pool and is a good size. There are no hot tubs, but just remember the quiet pool. If you want to go for broke, do Concierge...Mmmmmmm! Both restaurants here are good.
Wilderness Lodge--- beautiful resort with a very rustic feel. We think the lobby is gorgeous as is the pool. This pool was the last built before they went to the zero entry type. The archetecture is phenomenal. The rooms are on the small size, especially with the large design of the furniture. Request a King Sized bed, if they have rooms with these, as you will have more room to move around that way. Try to stay away from rooms above Whispering Canyon, as the restaurant, by its very nature, is loud and you can hear it in your rooms... not something you want to hear if you are trying to sleep in or have a romantic encounter before 11 pm. We only had 2 things which we thought could be better, and they were room size, :squeeze: and transportation. The bus transportation is likely better now that they have paired WL with GF instead of Ft Wilderness, but the boats, (which we were not aware of) don't start running until after Extra Magic Hour has started.
Grand Floridian--- eventually I will stay there, even if my DH has to stay elsewhere. I think it is the ultimate for a honeymoom. I have always dreamed of staying in one of the Turret rooms overlooking Cinderella's castle... maybe when I win the lottery!!! DH thinks the place is too stuffy for his taste. (must be a guy thing)
I think it is gorgeous! The restaurants are all very good, and if you want a special (albeit expensive) dinner, make a reservation for Victoria and Alberts. Just remember to dress for this. Men must have a collared shirt and Jacket (I believe the tie is optional) and the lady must wear semi formal clothing, whether a dress or pants suit. It is very expensive, but anyone I have have talked to who has been said it was well worth it! There are 2 pools, one is the quiet pool, although since it used to be the only pool, it is in the middle of everything. The main pool is now located to the side of the GF, near the wedding chapel. It has a pool and water fall, and is zero entry. You may also want to treat yourselves to a couples spa treatment at the Grand Floridian Spa. Whether you are staying at GF or the Poly, you have access to the spas, hot tubs, etc at the GF. The beach here is beautiful and looks out toward the Polynesian and MK. The transporation here is also very convenient if going to MK, as it is the next bus stop. However, because you will be among the last to board, it will be standing room only... but the ride is a really short one.
What ever you decide (and really, with these choices there is NO bad choice), have a wonderful Honeymoon!
The room was nice and spacious, my oldest DD slept on a trundle bed and loved it. The inside atrium view of the CR is breathtaking, from the floor the whole way up to the 14-story or so roof. And we did Chef Mickey's one morning, which was a total highlight for all 5 of us. 
-- Plus no hot tub at the Poly. We have also always had excellent service at the GF. 
