All of the small boats are the same at all of those resorts. The ones at the Contemporary are located on Bay Lake and they might restrict you to that lake only. The Poly and GF would be on Seven Seas Lagoon. The price is the same at all of the resorts that rent them.
In addition to the resorts mentioned, you can also rent at Wilderness Lodge and Fort Wilderness. The boats are not restricted to either Seven Seas Lagoon or Bay Lake. You can do both.
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