I was also going to ask this question. So are you saying the Kilimanjaro Safari and Expedition Everest are the only things that will have a long wait?
We don't plan on doing EE, so we will go to KS first and then is there a better direction to tour the park from there?
Also Dinosaur and Triceratop Spin have long waits.
We have always rushed to get a FP for EE, then gone to KS to ride because everyone told us you MUST ride the safari first thing in the morning to see the animals. Then last May we bucked the system and didn't ride KS until close to noon and saw MORE animals! Maybe just luck?
AK is a hard park to pack into one day, since they close early. But if you've already seen FOTLK, that will help.
I would get FP for EE, then go hit Africa - ride KS, head to Rafiki's Planet Watch (personally, not a big fan and hit takes a big chunk out of your day). Then go back and ride EE. Then get FP for KRR while you're in Asia. Then head to Dinoland, stopped to watch Nemo along the way. Ride TS, PW, then get FP for Dinosaur. Should be about lunchtime by now. AFter lunch you have two FPs to use, and then you can just stroll and relax. And if you eat at Flame Tree BBQ, you should be close to Bugs Life movie, too. Don't forget Camp Minnie-Mickey if you want autographs!
My opinion, the not to be missed are:
EE, KS, FOTLK, Nemo, Dinosaur. Remember too that this park always appears to be a lot busier than it is. The paths are narrow and it feels congested. But it's a hidden gem, so take the time to explore and take it all in.