According to WDW-RIDE, the boats "should" still be running. This was after being placed on hold for 3 mins while he confirmed it after I reminded him that part of Port Orleans was closed. (Apparently, this was news for him.)
(407) WDW-RIDE used to be manned by Bus Central... but now it's being handled by some call center thats not neccesarily in Orlando... *sigh* I don't always trust them... (they don't wear purple pants) LOL
As for Buses... Riverside only has one active bus stop - at the Main Lobby... It's now being Flex Dispatched all day long. Caribbean Beach has 7 stops, and is being MOD dispatched by Epcot in the mornings.
Either way, buses will run approx every 15 minutes all day long. They might run a bit quicker at CBR during morning hours.