Candy Cane Inn has its own shuttle service and breakfast (bagels, muffins, fruit, juice, etc.) You can also walk pretty easily.
Hojo's has fun pool. Depending on which side you are on the freeway noise could bother you. Also crossing Harbor may or may not bother you.
Candy Cane has a more quaint feel to it.
Either place will tire you out walking by the end of the day. So if transportation is important the Candy Cane might be a better choice.