They are two different animals. Wilderness lodge has the villas (studio, 1 bedroom and 2 bedrooms). Ft. Wilderness has the cabins. We love both, but as I said they are different.
1. Price point. FT. Wilderness is the cheaper of the two by far. The cabins will fit 4 easily. They have a full kitchen, a seperate bedroom with bunk beds and a full size bed. In the living room there is a pull down bed that comes from the wall. The cabins have a big patio that you can sit on and have lunch and if you are driving you can drive right up to your cabin.
The Villas at WL is attached to a Deluxe resort. So you get the amenities, 2 TS restaurants, gym, theme pool and a quiet pool, gift shop etc. and if you get a 1 bedroom you will have a jacuzzi tub, master bath and a washer/dryer in your room. The WL is a stunning resort, one of the best themed resort IMO.
I'll leave the transportation issues to another dissers. PM me with any questions you have, I'd be happy to give you my take on it.