I paid a visit to Spidey today and kept an eye out for the towers. I didn't see them anywhere during the ride, so I wouldn't expect anything to change there. In the queue though, instead of the 2 videos that played in the "Newsroom" and "Spider" rooms, there is now a single new video that plays in both. While the previous videos were of a "breaking news" type whose purpose was to inform guests of the plot, the new one is a type of documentary about the Daily Bugle that tells its history from its beginnings as a small paper to the present with the Scoops. It's animated and in the same style of the previous videos. There may be more to it but the line was so short I breezed through in only a couple minutes.
Also, I noticed that the large Bugle story hanging on the wall as you exit has been removed. I didn't notice if any of the ones in the queue were.